emissionProbHD: The emission probabilities for 1 haploid chromosome and 1...
In bahlolab/isoRelate: Identity-by-Descent Inference of Haploid Recombining Organisms
Description
The emission probabilities for 1 haploid chromosome and 1 diploid chromosome
Usage
1
2
emissionProbHD(pop_allele_freq, genotype_1, genotype_2, ibd, male_column,
female_column)
Arguments
pop_allele_freq
The population allele frequency for SNP i. This corresponds to the reference allele
genotype_1
The genotype for isolate 1 from the pair for SNP i
genotype_2
The genotype for isolate 2 from the pair for SNP i
ibd
The IBD state
male_column
The haploid isolate from the pair. Either 1 or 2
female_column
The diploid isolate from the pair. Either 1 or 2
bahlolab/isoRelate documentation built on May 11, 2019, 5:25 p.m.
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Description
The emission probabilities for 1 haploid chromosome and 1 diploid chromosome
Usage
1 2 | emissionProbHD(pop_allele_freq, genotype_1, genotype_2, ibd, male_column,
female_column)
|
Arguments
pop_allele_freq |
The population allele frequency for SNP i. This corresponds to the reference allele |
genotype_1 |
The genotype for isolate 1 from the pair for SNP i |
genotype_2 |
The genotype for isolate 2 from the pair for SNP i |
ibd |
The IBD state |
male_column |
The haploid isolate from the pair. Either 1 or 2 |
female_column |
The diploid isolate from the pair. Either 1 or 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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