emissionProbMissingGeno: Calculating the emission probability sumation when missing...
In bahlolab/isoRelate: Identity-by-Descent Inference of Haploid Recombining Organisms
Description
Calculating the emission probability sumation when missing genotype calls present
Usage
1
2
emissionProbMissingGeno(pop_allele_freq, genotype_1, genotype_2, error,
gender_1, gender_2, ibd_j)
Arguments
pop_allele_freq
The population allele frequency of SNP t
genotype_1
The genotype of isolate 1 at SNP t
genotype_2
The genotype of isolate 2 at SNP t
error
The genotype error rate
gender_1
The MOI estimate of isolate 1
gender_2
The MOI estimate of isolate 2
ibd_j
The IBD state
bahlolab/isoRelate documentation built on May 11, 2019, 5:25 p.m.
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Description
Calculating the emission probability sumation when missing genotype calls present
Usage
1 2 | emissionProbMissingGeno(pop_allele_freq, genotype_1, genotype_2, error,
gender_1, gender_2, ibd_j)
|
Arguments
pop_allele_freq |
The population allele frequency of SNP t |
genotype_1 |
The genotype of isolate 1 at SNP t |
genotype_2 |
The genotype of isolate 2 at SNP t |
error |
The genotype error rate |
gender_1 |
The MOI estimate of isolate 1 |
gender_2 |
The MOI estimate of isolate 2 |
ibd_j |
The IBD state |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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