calculateMissingness: Calculate Missingness Proportions
In bahlolab/isoRelate: Identity-by-Descent Inference of Haploid Recombining Organisms
Description
Usage
Arguments
Value
Description
Calculates the proportion of missing data for each SNPs or each isolate where missing values are denoted by -1.
Missing values are calculated for each column of genotypes (where columns are isolates and rows are SNPs),
however genotypes can be transposed to calculate missingness proportions for SNPs.
Usage
1
calculateMissingness(genotypes)
Arguments
genotypes
An integer matrix of genotype data of the form -1, 0, 1 and 2 representing missing genotypes, homozygous reference, heterozygous and homozygous alternative respectively.
Value
A vector of length n where n is the number of columns in genotypes.
bahlolab/isoRelate documentation built on May 11, 2019, 5:25 p.m.
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Description Usage Arguments Value
Description
Calculates the proportion of missing data for each SNPs or each isolate where missing values are denoted by -1.
Missing values are calculated for each column of genotypes (where columns are isolates and rows are SNPs),
however genotypes can be transposed to calculate missingness proportions for SNPs.
Usage
1 | calculateMissingness(genotypes)
|
Arguments
genotypes |
An integer matrix of genotype data of the form -1, 0, 1 and 2 representing missing genotypes, homozygous reference, heterozygous and homozygous alternative respectively. |
Value
A vector of length n where n is the number of columns in genotypes.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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