mpMap2gs: Export objects to Richard Mott's genome_scan
In behuang/mpMap: Multi-Parent RIL Genetic Analysis
Description
Usage
Arguments
Value
Description
Given an mpcross object, export it in files suitable for input
to Richard Mott's reconstruction and genome_scan (http://mus.well.ox.ac.uk/19genomes/magic.html) algorithms
Usage
1
Arguments
mpcross
Object to export
cm2bp
Factor for converting a genetic map to physical map (how many bp per centiMorgan)
removeMono
Remove monomorphic markers - not required
Value
Two directories of files ready for input to reconstruction; VARIANT.TABLES (containing founder info) and LINES (containing progeny info). Note that the file reconstruction_lib.c may need modifying if the number of chromosomes simulated is nonstandard.
behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.
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Description Usage Arguments Value
Description
Given an mpcross object, export it in files suitable for input to Richard Mott's reconstruction and genome_scan (http://mus.well.ox.ac.uk/19genomes/magic.html) algorithms
Usage
1 |
Arguments
mpcross |
Object to export |
cm2bp |
Factor for converting a genetic map to physical map (how many bp per centiMorgan) |
removeMono |
Remove monomorphic markers - not required |
Value
Two directories of files ready for input to reconstruction; VARIANT.TABLES (containing founder info) and LINES (containing progeny info). Note that the file reconstruction_lib.c may need modifying if the number of chromosomes simulated is nonstandard.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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