Files in behuang/mpMap
Multi-Parent RIL Genetic Analysis
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/CR-calcLD.R
R/add3pt.R
R/calcmpprob.R
R/check-QTL.R
R/clean.mpcross.R
R/cleanmap.R
R/cleanrf.R
R/combine-chr.R
R/combine-ibd.R
R/combine-ld.R
R/compare-orders.R
R/compute-bnld.R
R/computemap.R
R/convertHappy2Mpcross.R
R/convertped.R
R/fillmiss.R
R/findqtl.R
R/findqtl2.R
R/fit.mpqtl.R
R/gen2ped.R
R/gen4ped.R
R/gen8ped.R
R/generate-error.R
R/generate-error2.R
R/generate-obs.R
R/generate-pheno.R
R/getAllFunnels.R
R/getpval.R
R/identifyDesign.R
R/mapcomp.R
R/maporder.R
R/mp-mapdist.R
R/mpIM.R
R/mpIMlm.R
R/mpMap-output.R
R/mpMap2gs.R
R/mpadd.R
R/mpcalcld.R
R/mpchrrf.R
R/mpclean.R
R/mpcollapse.R
R/mpcross.R
R/mpestrf.R
R/mpexpand.R
R/mpgroup.R
R/mpimpute.R
R/mpimputerf.R
R/mporder.R
R/mpprob.R
R/mpsegrat.R
R/nai.R
R/outputPedigreeGraph.R
R/phys2gen.R
R/plot.mpcross.R
R/plot.mpprob.R
R/plot.mpqtl.R
R/plotlink.map.R
R/print.mapcomp.R
R/print.mpcross.R
R/print.mpprob.R
R/print.mpqtl.R
R/qtlmap.R
R/read.mpcross.R
R/roxygen.R
R/sim.mpcross.R
R/sim.mpped.R
R/sim.sigthr.R
R/subset.binmpcross.R
R/subset.mpcross.R
R/subset.mpprob.R
R/summary.mpcross.R
R/summary.mpprob.R
R/summary.mpqtl.R
R/supportinterval.R
R/testFunnelEffects.R
R/tmp.founder.csv
R/tmp.ril.csv
R/validate.R
R/waldTests.R
README
TODO
configure.ac
inst/CITATION
inst/include/allowableMarkerPatterns.h
inst/include/arrayDeleter.h
inst/include/findIDInPedigree.h
inst/include/generateDesignMatrix.h
inst/include/getAllFunnels.h
inst/include/getFunnelCPU.h
inst/include/getFunnelGPU.h
inst/include/impute.h
inst/include/intercrossingGenerations.h
inst/include/markerPatternsToUniqueValues.h
inst/include/mpMap.h
inst/include/orderFunnels.h
inst/include/recodeFoundersAndFinals.h
inst/include/rfhaps.h
inst/include/rfhapsSpecificDesign.h
inst/include/rfhaps_common.h
inst/include/rfhaps_cpu.h
inst/include/rfhaps_gpu.h
inst/include/rngs.h
inst/include/validateMPCross.h
make
man/add3pt.Rd
man/clean.mpcross.Rd
man/cleanmap.Rd
man/compare_orders.Rd
man/computemap.Rd
man/fillmiss.Rd
man/findqtl.Rd
man/findqtl2.Rd
man/fit.Rd
man/identifyDesign.Rd
man/mapcomp-all.Rd
man/maporder.Rd
man/mp-mapdist.Rd
man/mpIM.Rd
man/mpIMlm.Rd
man/mpMap-internal.Rd
man/mpMap-output.Rd
man/mpMap-package.Rd
man/mpMap-package.Rd~
man/mpMap2gs.Rd
man/mpadd.Rd
man/mpcalcld.Rd
man/mpchrrf.Rd
man/mpclean.Rd
man/mpcollapse.Rd
man/mpcross.Rd
man/mpestrf.Rd
man/mpexpand.Rd
man/mpgroup.Rd
man/mpimpute.Rd
man/mpimputerf.Rd
man/mporder.Rd
man/mpprob.Rd
man/nai.Rd
man/phys2gen.Rd
man/plot.mpcross.Rd
man/plot.mpprob.Rd
man/plot.mpqtl.Rd
man/plotlink.map.Rd
man/qtlmap.Rd
man/read.mpcross.Rd
man/sim.mpcross.Rd
man/sim.mpped.Rd
man/sim.sigthr.Rd
man/subset.binmpcross.Rd
man/subset.mpcross.Rd
man/subset.mpprob.Rd
man/summary.mpcross.Rd
man/summary.mpprob.Rd
man/summary.mpqtl.Rd
man/supportinterval.Rd
src/.gitignore
src/Makefile.in
src/Makevars
src/Makevars.win
src/Unique.hpp
src/add3pt.c
src/allowableMarkerPatterns.cpp
src/calcLD.c
src/findIDInPedigree.cpp
src/founderprob.c
src/generateDesignMatrix.cpp
src/generateGenotypes.cpp
src/generateGenotypes.h
src/getAllFunnels.cpp
src/getFunnel.cpp
src/impute.cpp
src/intercrossingGenerations.cpp
src/markerPatternsToUniqueValues.cpp
src/orderFunnels.cpp
src/qsort.c
src/recodeFoundersAndFinals.cpp
src/register.cpp
src/rfhaps.cpp
src/rfhapsSpecificDesign.cpp
src/rfhaps_cpu.cpp
src/rfhaps_gpu.cu
src/sharedArray.hpp
src/validateMPCross.cpp
tools/config.guess
tools/config.sub
tools/install-sh
