mpchrrf: Return Chromosome Recombination Fractions

In behuang/mpMap: Multi-Parent RIL Genetic Analysis

Description

Returns the matrix of recombination fraction estimates between markers in a specified linkage group

Usage

mpchrrf(object, chr)

Arguments

object	Object of class mpcross
chr	A vector of the chromosome(s) of interest

Value

A list with a component for each element of chr. Each component is the matrix of recombination fractions for the markers in that linkage group

Examples

map <- qtl::sim.map(len=rep(10,2), n.mar=30, eq.spacing=FALSE, include.x=FALSE)
sim.ped <- sim.mpped(4, 1, 500, 6, 1)
sim.dat <- sim.mpcross(map=map, pedigree=sim.ped, seed=1)
dat.rf <- mpestrf(sim.dat)
dat.lg<-mpgroup(dat.rf, 2)
rf1<-mpchrrf(dat.lg, chr=1)

behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.