Description Usage Arguments Value See Also
Outputs the genotype information from an 'mpcross' object to files which can be read in to either R/qtl cross format or R/happy.hbrem format
1 2 3 | write2cross(object, filestem, chr, ...)
write2happy(object, filestem, chr, ...)
write.mpcross(object, filestem="mp", chr, format=c("qtl", "happy"), ...)
|
object |
Object of class |
filestem |
Filestem for all files which are output; may include directory |
chr |
Subset of chromosomes to be output; default is all |
format |
Output format - R/qtl or happy.hbrem |
... |
Additional arguments |
For R/qtl cross format, two files are output: filestem.ril.csv and filestem.founder.csv which can be then read into the R/qtl package using
readMWril
.
For R/happy.hbrem format, two files are output for each chromosome: e.g. filestem.chr1.alleles and filestem.chr1.data. These can be directly input to happy
.
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