phys2gen: Estimate a genetic map based on physical map ordering in...
In behuang/mpMap: Multi-Parent RIL Genetic Analysis

Description Usage Arguments Details Value

Use an input physical map to group and order markers; estimate positions based on recombination fractions between adjacent markers

1	phys2gen(physmap, mpcross, mapfx, maxrf = 0.25)

`physmap`	Physical map to be used for groups and orders of markers
`mpcross`	Mpcross objects from which to estimate recombination fractions
`mapfx`	Map function to convert recombination fractions to cM
`maxrf`	Maximum rf to allow between markers before removing from map

For each pair of adjacent markers recombination fractions are estimated, and the map positions computed as the sum of adjacent cM values. The returned object is of class "pgmap", which contains both physical and genetic map information for ease of later comparison.

A pgmap object is returned containing both genetic and physical map positions.

behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.