plotlink.map: Plots linkage maps

Description Usage Arguments Value Author(s)

Description

Plot linkage map (either as input object or as stored in mpcross object). Can also highlight QTL regions when used with qtlmap function. Modification of code from package wgaim.

Usage

1
plotlink.map(object, chr, marker.names = TRUE, colqtl = "red", ...)

Arguments

object

Either mpcross or map object

chr

Chromosomes to plot

marker.names

Whether to plot marker names

colqtl

Color to plot QTL regions.

...

Additional arguments

Value

Modification of link.map.cross function from wgaim to allow more general input objects and to highlight regions around QTL. If any markers are labelled "QTLx" then they will be plotted in a different color.

Author(s)

Emma Huang, Julian Taylor


behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.