plotlink.map: Plots linkage maps

In behuang/mpMap: Multi-Parent RIL Genetic Analysis

Description

Plot linkage map (either as input object or as stored in mpcross object). Can also highlight QTL regions when used with qtlmap function. Modification of code from package wgaim.

Usage

plotlink.map(object, chr, marker.names = TRUE, colqtl = "red", ...)

Arguments

object	Either mpcross or map object
chr	Chromosomes to plot
marker.names	Whether to plot marker names
colqtl	Color to plot QTL regions.
...	Additional arguments

Value

Modification of link.map.cross function from wgaim to allow more general input objects and to highlight regions around QTL. If any markers are labelled "QTLx" then they will be plotted in a different color.

Author(s)

Emma Huang, Julian Taylor

behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.