summary.mpprob: Summary of mpprob object

In behuang/mpMap: Multi-Parent RIL Genetic Analysis

Description

Summarizes details about underlying mpcross object as well as descriptive statistics about estimated founder haplotypes

Usage

## S3 method for class 'mpprob'
summary(object, ...)

Arguments

object	Object of class mpprob
...	Additional arguments

Value

Output to screen of percentage of each chromosome inherited from founders, average number of recombinations per chromosome and genomewide, and number of finals/founders/chromosomes/markers per chromosome.

See Also

plot.mpprob, mpprob

Examples

sim.map <- qtl::sim.map(len=rep(100, 2), n.mar=11, include.x=FALSE, eq.spacing=TRUE)
sim.ped <- sim.mpped(4, 1, 500, 6, 1)
sim.dat <- sim.mpcross(map=sim.map, pedigree=sim.ped, 
	qtl=matrix(data=c(1, 10, .4, 0, 0, 0, 1, 70, 0, .35, 0, 0), 
	nrow=2, ncol=6, byrow=TRUE), seed=1)
mpp.dat <- mpprob(sim.dat, program="qtl")
summary(mpp.dat)

behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.