mpcalcld: Calculate linkage disequilibrium between all pairs of markers
In behuang/mpMap: Multi-Parent RIL Genetic Analysis
Description
Usage
Arguments
Value
References
See Also
Description
Calculate linkage disequilibrium for multiple multi-allelic measures, including Lewontin's D, W, and correlation.
Usage
1
mpcalcld(object)
Arguments
object
Object of class mpcross
Value
Original object with additional component ld consisting of separate matrices for each different measure.
W
Related to Chi-square test for independence (measure of non-centrality)
LewontinD
Lewontin's D' statistic
delta2
Delta-squared statistic
r2
Correlation between markers
References
Zhao H, Nettleton D, Soller M and JCM Dekkers (2005) Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL. Genet Res Camb 86:77-87.
See Also
behuang/mpMap documentation built on May 12, 2019, 10:53 a.m.
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Description Usage Arguments Value References See Also
Description
Calculate linkage disequilibrium for multiple multi-allelic measures, including Lewontin's D, W, and correlation.
Usage
1 | mpcalcld(object)
|
Arguments
object |
Object of class |
Value
Original object with additional component ld consisting of separate matrices for each different measure.
W |
Related to Chi-square test for independence (measure of non-centrality) |
LewontinD |
Lewontin's D' statistic |
delta2 |
Delta-squared statistic |
r2 |
Correlation between markers |
References
Zhao H, Nettleton D, Soller M and JCM Dekkers (2005) Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL. Genet Res Camb 86:77-87.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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