addCellMetadata: addCellMetadata

In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

Description

adds cell metadata to the giotto object

Usage

addCellMetadata(
  gobject,
  new_metadata,
  vector_name = NULL,
  by_column = FALSE,
  column_cell_ID = NULL
)

Arguments

gobject	giotto object
new_metadata	new cell metadata to use (data.table, data.frame, ...)
vector_name	(optional) custom name if you provide a single vector
by_column	merge metadata based on cell_ID column in pDataDT (default = FALSE)
column_cell_ID	column name of new metadata to use if by_column = TRUE

Details

You can add additional cell metadata in two manners:

• 1. Provide a data.table or data.frame with cell annotations in the same order as the cell_ID column in pDataDT(gobject)

• 2. Provide a data.table or data.frame with cell annotations and specificy which column contains the cell IDs, these cell IDs need to match with the cell_ID column in pDataDT(gobject)

Value

giotto object

Examples

    addCellMetadata(gobject)

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.