clusterSpatialCorGenes: clusterSpatialCorGenes
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox
Description
Usage
Arguments
Value
Examples
Description
Cluster based on spatially correlated genes
Usage
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clusterSpatialCorGenes(
spatCorObject,
name = "spat_clus",
hclust_method = "ward.D",
k = 10,
return_obj = TRUE
)
Arguments
spatCorObject
spatial correlation object
name
name for spatial clustering results
hclust_method
method for hierarchical clustering
k
number of clusters to extract
return_obj
return spatial correlation object (spatCorObject)
Value
spatCorObject or cluster results
Examples
1
clusterSpatialCorGenes(gobject)
bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.
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Description Usage Arguments Value Examples
Description
Cluster based on spatially correlated genes
Usage
1 2 3 4 5 6 7 | clusterSpatialCorGenes(
spatCorObject,
name = "spat_clus",
hclust_method = "ward.D",
k = 10,
return_obj = TRUE
)
|
Arguments
spatCorObject |
spatial correlation object |
name |
name for spatial clustering results |
hclust_method |
method for hierarchical clustering |
k |
number of clusters to extract |
return_obj |
return spatial correlation object (spatCorObject) |
Value
spatCorObject or cluster results
Examples
1 | clusterSpatialCorGenes(gobject)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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