annotateSpatialNetwork: annotateSpatialNetwork
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox
Description
Usage
Arguments
Value
Examples
View source: R/spatial_structures.R
Description
Annotate spatial network with cell metadata information.
Usage
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annotateSpatialNetwork(
gobject,
spatial_network_name = "Delaunay_network",
cluster_column,
create_full_network = F
)
Arguments
gobject
giotto object
spatial_network_name
name of spatial network to use
cluster_column
name of column to use for clusters
create_full_network
convert from reduced to full network representation
Value
annotated network in data.table format
Examples
1
annotateSpatialNetwork(gobject)
bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.
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Description Usage Arguments Value Examples
View source: R/spatial_structures.R
Description
Annotate spatial network with cell metadata information.
Usage
1 2 3 4 5 6 | annotateSpatialNetwork(
gobject,
spatial_network_name = "Delaunay_network",
cluster_column,
create_full_network = F
)
|
Arguments
gobject |
giotto object |
spatial_network_name |
name of spatial network to use |
cluster_column |
name of column to use for clusters |
create_full_network |
convert from reduced to full network representation |
Value
annotated network in data.table format
Examples
1 | annotateSpatialNetwork(gobject)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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