calculateMetaTable: calculateMetaTable
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox
Description
Usage
Arguments
Value
Examples
Description
calculates the average gene expression for one or more (combined) annotation columns.
Usage
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calculateMetaTable(
gobject,
expression_values = c("normalized", "scaled", "custom"),
metadata_cols = NULL,
selected_genes = NULL
)
Arguments
gobject
giotto object
expression_values
expression values to use
metadata_cols
annotation columns found in pDataDT(gobject)
selected_genes
subset of genes to use
Value
data.table with average expression values for each gene per (combined) annotation
Examples
1
calculateMetaTable(gobject)
bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.
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Description Usage Arguments Value Examples
Description
calculates the average gene expression for one or more (combined) annotation columns.
Usage
1 2 3 4 5 6 | calculateMetaTable(
gobject,
expression_values = c("normalized", "scaled", "custom"),
metadata_cols = NULL,
selected_genes = NULL
)
|
Arguments
gobject |
giotto object |
expression_values |
expression values to use |
metadata_cols |
annotation columns found in pDataDT(gobject) |
selected_genes |
subset of genes to use |
Value
data.table with average expression values for each gene per (combined) annotation
Examples
1 | calculateMetaTable(gobject)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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