anndataToGiotto: anndataToGiotto
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox
Description
Usage
Arguments
Details
Value
View source: R/interoperability.R
Description
Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object
Usage
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anndataToGiotto(
anndata_path,
metadata_cols = c("total_counts", "pct_counts_mt"),
instructions = NULL,
...
)
Arguments
anndata_path
path to the .h5ad file
metadata_cols
metadata columns to include
instructions
giotto instructions
Details
Function in beta.
Value
Giotto object
bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.
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Description Usage Arguments Details Value
View source: R/interoperability.R
Description
Converts a spatial anndata (e.g. scanpy) .h5ad file into a Giotto object
Usage
1 2 3 4 5 6 | anndataToGiotto(
anndata_path,
metadata_cols = c("total_counts", "pct_counts_mt"),
instructions = NULL,
...
)
|
Arguments
anndata_path |
path to the .h5ad file |
metadata_cols |
metadata columns to include |
instructions |
giotto instructions |
Details
Function in beta.
Value
Giotto object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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