average_gene_gene_expression_in_groups: average_gene_gene_expression_in_groups
In bernard2012/Giotto: Spatial single-cell transcriptomics toolbox

calculate average expression per cluster

average_gene_gene_expression_in_groups(
  gobject,
  cluster_column = "cell_types",
  gene_set_1,
  gene_set_2
)

`gobject`	giotto object to use
`cluster_column`	cluster column with cell type information
`gene_set_1`	first specific gene set from gene pairs
`gene_set_2`	second specific gene set from gene pairs

Details will follow soon.

data.table with average expression scores for each cluster

bernard2012/Giotto documentation built on Sept. 22, 2020, 10:29 a.m.

bernard2012/Giotto index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

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