API for bernatgel/regioneR
Association analysis of genomic regions based on permutation tests

Global functions
Curry Source code
characterToBSGenome Man page
circularRandomizeRegions Man page Source code
commonRegions Man page Source code
copySeqLevels Source code
createFunctionsList Man page Source code
createRandomRegions Man page Source code
emptyCacheRegioneR Man page Source code
extendRegions Man page Source code
filterChromosomes Man page Source code
getChromosomesByOrganism Man page Source code
getGenome Man page
getGenomeAndMask Man page
getMask Man page
joinRegions Man page Source code
listChrTypes Man page Source code
localZScore Man page Source code
maskFromBSGenome Man page
meanDistance Man page Source code
meanInRegions Man page Source code
mergeRegions Man page Source code
numOverlaps Man page Source code
overlapGraphicalSummary Man page Source code
overlapPermTest Man page Source code
overlapRegions Man page Source code
permTest Man page Source code
plot.localZScoreResults Man page Source code
plot.localZScoreResultsList Man page Source code
plot.permTestResults Man page Source code
plot.permTestResultsList Man page Source code
plotRegions Man page Source code
print.permTestResults Man page Source code
private_randomizeRegions Source code
randomizeFastWithNoOverlappingControl Source code
randomizeRegions Man page Source code
recomputePermTest Man page Source code
removeOverlapping Source code
resampleRegions Man page Source code
spinChromosome Source code
splitRegions Man page Source code
subtractRegions Man page Source code
summary.permTestResults Man page Source code
summary.permTestResultsList Man page Source code
toDataframe Man page Source code
toGRanges Man page Source code
uniqueRegions Man page Source code
bernatgel/regioneR documentation built on Nov. 1, 2017, 5:51 a.m.