Files in bernatgel/regioneR
Association analysis of genomic regions based on permutation tests

DESCRIPTION
NAMESPACE
NEWS
R/characterToBSGenome.R R/circularRandomizeRegions.R R/commonRegions.R R/createFunctionsList.R R/createRandomRegions.R R/emptyCacheRegioneR.R R/extendRegions.R R/filterChromosomes.R R/getChromosomesByOrganism.R R/getGenome.R R/getGenomeAndMask.R R/getMask.R R/joinRegions.R R/listChrTypes.R R/localZScore.R R/maskFromBSGenome.R R/meanDistance.R R/meanInRegions.R R/mergeRegions.R R/numOverlaps.R R/overlapGraphicalSummary.R R/overlapPermTest.R R/overlapRegions.R R/permTest.R R/plot.localZScoreResults.R R/plot.localZScoreResultsList.R R/plot.permTestResults.R R/plot.permTestResultsList.R R/plotRegions.R R/print.permTestResults.R R/randomizeRegions.R R/recomputePermTest.R R/resampleRegions.R R/splitRegions.R R/subtractRegions.R R/summary.permTestResults.R R/summary.permTestResultsList.R R/toDataframe.R R/toGRanges.R R/uniqueRegions.R
inst/CITATION
inst/extdata/all.genes.bed
inst/extdata/my.altered.regions.bed
inst/extdata/my.special.genes.bed
man/characterToBSGenome.Rd man/circularRandomizeRegions.Rd man/commonRegions.Rd man/createFunctionsList.Rd man/createRandomRegions.Rd man/emptyCacheRegioneR.Rd man/extendRegions.Rd man/filterChromosomes.Rd man/getChromosomesByOrganism.Rd man/getGenome.Rd man/getGenomeAndMask.Rd man/getMask.Rd man/joinRegions.Rd man/listChrTypes.Rd man/localZScore.Rd man/maskFromBSGenome.Rd man/meanDistance.Rd man/meanInRegions.Rd man/mergeRegions.Rd man/numOverlaps.Rd man/overlapGraphicalSummary.Rd man/overlapPermTest.Rd man/overlapRegions.Rd man/permTest.Rd man/plot.localZScoreResults.Rd man/plot.localZScoreResultsList.Rd man/plot.permTestResults.Rd man/plot.permTestResultsList.Rd man/plotRegions.Rd man/print.permTestResults.Rd man/randomizeRegions.Rd man/recomputePermTest.Rd man/resampleRegions.Rd man/splitRegions.Rd man/subtractRegions.Rd man/summary.permTestResults.Rd man/summary.permTestResultsList.Rd man/toDataframe.Rd man/toGRanges.Rd man/uniqueRegions.Rd tests/testthat.R tests/testthat/test_evaluationFunctions.R tests/testthat/test_genomesAndMasks.R
tests/testthat/test_numOverlaps.R
tests/testthat/test_permTest.R tests/testthat/test_randomizationFunctions.R vignettes/figures/Example1_fig1.pdf vignettes/figures/Example2_fig1.pdf vignettes/figures/Example2_fig2.pdf vignettes/figures/Example2_fig3.pdf vignettes/figures/Example2_fig4.pdf vignettes/figures/mask_test_regioneR_small.pdf vignettes/figures/regular_genes_5000perm.pdf vignettes/figures/special_genes_5000perm.pdf vignettes/figures/speed_test_regioneR_small.pdf
vignettes/regioneR.Rnw
bernatgel/regioneR documentation built on Nov. 1, 2017, 5:51 a.m.