recomputePermTest: Recompute Permutation Test
In bernatgel/regioneR: Association analysis of genomic regions based on permutation tests
View source: R/recomputePermTest.R
recomputePermTest R Documentation
Recompute Permutation Test
Description
Recomputes the permutation test changing the alternative hypotesis
Usage
recomputePermTest(ptr)
Arguments
ptr
an object of class permTestResults
Value
A list of class permTestResults containing the same components as permTest results.
See Also
permTest
Examples
A <- createRandomRegions(nregions=10, length.mean=1000000)
B <- createRandomRegions(nregions=10, length.mean=1000000)
resPerm <- permTest(A=A, B=B, ntimes=5, alternative="less", genome="hg19", evaluate.function=meanDistance, randomize.function=randomizeRegions)
plot(resPerm)
bernatgel/regioneR documentation built on Sept. 10, 2023, 12:03 a.m.
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View source: R/recomputePermTest.R
| recomputePermTest | R Documentation |
Recompute Permutation Test
Description
Recomputes the permutation test changing the alternative hypotesis
Usage
recomputePermTest(ptr)
Arguments
ptr |
an object of class |
Value
A list of class permTestResults containing the same components as permTest results.
See Also
permTest
Examples
A <- createRandomRegions(nregions=10, length.mean=1000000)
B <- createRandomRegions(nregions=10, length.mean=1000000)
resPerm <- permTest(A=A, B=B, ntimes=5, alternative="less", genome="hg19", evaluate.function=meanDistance, randomize.function=randomizeRegions)
plot(resPerm)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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