Man pages for bernatgel/regioneR
Association analysis of genomic regions based on permutation tests

characterToBSGenomecharacterToBSGenome
circularRandomizeRegionsCircular Randomize Regions
commonRegionsCommon Regions
createFunctionsListCreate Functions List
createRandomRegionsCreate Random Regions
emptyCacheRegioneREmpty Cache regioneR
extendRegionsExtend Regions
filterChromosomesfilterChromosomes
getChromosomesByOrganismgetChromosomesByOrganism
getGenomegetGenome
getGenomeAndMaskgetGenomeAndMask
getMaskgetMask
joinRegionsJoin Regions
listChrTypesfilterChromosomes listChrTypes
localZScoreLocal z-score
maskFromBSGenomemaskFromBSGenome
meanDistanceMean Distance
meanInRegionsMean In Regions
mergeRegionsMerge Regions
numOverlapsNumber Of Overlaps
overlapGraphicalSummaryOverlap Graphical Summary
overlapPermTestPermutation Test for Overlap
overlapRegionsOverlap Regions
permTestPermutation Test
plot.localZScoreResultsPlot localZscore results
plot.localZScoreResultsListPlot a list of localZscore results
plot.permTestResultsFunction for plotting the results from a 'permTestResults'...
plot.permTestResultsListFunction for plotting the results from a...
plotRegionsPlot Regions
print.permTestResultsPrint permTestResults objects
randomizeRegionsRandomize Regions
recomputePermTestRecompute Permutation Test
resampleRegionsResample Regions
splitRegionsSplit Regions
subtractRegionsSubtract Regions
summary.permTestResultsSummary of permTestResults objects
summary.permTestResultsListSummary of permTestResultsList objects
toDataframetoDataframe
toGRangestoGRanges
uniqueRegionsUnique Regions
bernatgel/regioneR documentation built on Nov. 1, 2017, 5:51 a.m.