plotRegions: Plot Regions

In bernatgel/regioneR: Association analysis of genomic regions based on permutation tests

Plot Regions

Description

Plots sets of regions

Usage

plotRegions(x, chromosome, start=NULL, end=NULL, regions.labels=NULL, regions.colors=NULL, ...)

Arguments

x	list of objects to be ploted.
chromosome	character or numeric value indicating which chromosome you want to plot.
start	numeric value indicating from which position you want to plot.
end	numeric value indicating to which position you want to plot.
regions.labels	vector indicating the labels for the y axes. It must have the same length as x.
regions.colors	character vector indicating the colors for the plotted regions. It must have the same length as x.
...	Arguments to be passed to methods, such as graphical parameters (see par).

Value

A plot is created on the current graphics device.

Examples

A <- data.frame(chr=1, start=c(1,15,24,40,50), end=c(10,20,30,45,55))

B <- data.frame(chr=1, start=c(2,12,28,35), end=c(5,25,33,43))

plotRegions(list(A,B), chromosome=1, regions.labels=c("A","B"), regions.colors=3:2)

bernatgel/regioneR documentation built on June 14, 2025, 9:54 p.m.