overlapGraphicalSummary: Overlap Graphical Summary

In bernatgel/regioneR: Association analysis of genomic regions based on permutation tests

Overlap Graphical Summary

Description

Graphical summary of the overlap between two set of regions.

Usage

overlapGraphicalSummary(A, B, regions.labels=c("A","B"), regions.colors=c("black","forestgreen","darkred"), ...)

Arguments

A	a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)
B	a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)
regions.labels	vector indicating the labels for the y axes.
regions.colors	character vector indicating the colors for the regions.
...	Arguments to be passed to methods, such as graphical parameters (see par). @return A plot is created on the current graphics device.

See Also

overlapPermTest, overlapRegions

Examples

A <- data.frame(chr=1, start=c(1,15,24,40,50), end=c(10,20,30,45,55))

B <- data.frame(chr=1, start=c(2,12,28,35), end=c(5,25,33,43))

overlapGraphicalSummary(A, B, regions.labels=c("A","B"), regions.colors=c(4,5,6))

bernatgel/regioneR documentation built on Sept. 10, 2023, 12:03 a.m.