uniqueRegions: Unique Regions

In bernatgel/regioneR: Association analysis of genomic regions based on permutation tests

Unique Regions

Description

Returns the regions unique to only one of the two region sets, that is, all parts of the genome covered by only one of the two region sets.

Usage

uniqueRegions(A, B)

Arguments

A	a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)
B	a region set in any of the accepted formats by toGRanges (GenomicRanges, data.frame, etc...)

Value

It returns a GenomicRanges object with the regions unique to one of the region sets.

Note

All metadata (additional columns in the region set in addition to chromosome, start and end) will be ignored and not present in the returned region set.

See Also

toGRanges, subtractRegions, commonRegions, mergeRegions

Examples

A <- data.frame("chr1", c(1, 10, 20, 30), c(12, 13, 28, 40))

B <- data.frame("chr1", 25, 35)

uniques <- uniqueRegions(A, B)

plotRegions(list(A, B, uniques), chromosome="chr1", regions.labels=c("A", "B", "uniques"), regions.colors=3:1)

bernatgel/regioneR documentation built on Sept. 10, 2023, 12:03 a.m.