computeTME: Compute total mediation effect
In bhattacharya-a-bt/MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies
computeTME R Documentation
Compute total mediation effect
Description
The function takes in a SNP-mediator set-gene triplet
and computes the total mediation effect with boots structure
Usage
computeTME(snp, expression, mediators, covs, indices)
Arguments
snp
vector, SNP of interest
expression
vector, gene expression of interest
mediators
data frame, mediators of interest
covs
data frame, covariates
indices
blank, index for boot package
Value
estimate of TME
bhattacharya-a-bt/MOSTWAS documentation built on April 6, 2023, 12:20 a.m.
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| computeTME | R Documentation |
Compute total mediation effect
Description
The function takes in a SNP-mediator set-gene triplet and computes the total mediation effect with boots structure
Usage
computeTME(snp, expression, mediators, covs, indices)
Arguments
snp |
vector, SNP of interest |
expression |
vector, gene expression of interest |
mediators |
data frame, mediators of interest |
covs |
data frame, covariates |
indices |
blank, index for boot package |
Value
estimate of TME
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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