getCisGenotypes: Gather the cis-genotypes for a given biomarker

In bhattacharya-a-bt/MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies

Gather the cis-genotypes for a given biomarker

Description

The function takes in a biomarker of interest (mediator or gene) and gather the cis-genotypes in a user-defined window around the biomarker.

Usage

getCisGenotypes(biomInt, locs, snps, snpLocs, cisDist = 5e+05)

Arguments

biomInt	character, identifier for biomarker of interest
locs	data frame, location file for the biomarkers
snps	data frame, SNP dosages
snpLocs	data frame, MatrixEQTL locations for SNPs
cisDist	numeric, window for cis distance

Value

list with matrix of cis-genotypes, vector of SNP names, and data frame of SNP locations

bhattacharya-a-bt/MOSTWAS documentation built on April 6, 2023, 12:20 a.m.