Files in biobakery/MMUPHin

Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

.github/pull_request_template.md R/CRC_abd-data.R R/CRC_meta-data.R R/adjust_batch.R R/continuous_discover.R R/controls.R R/discrete_discover.R R/helpers.R R/helpers_adjust_batch.R R/helpers_continuous_discover.R R/helpers_discrete_discover.R R/helpers_lm_meta.R R/lm_meta.R R/vaginal_abd-data.R R/vaginal_meta-data.R R/vignette_prep.R man/AST.Rd man/CRC_abd.Rd man/CRC_meta.Rd man/LOG.Rd man/Maaslin2_wrapper.Rd man/add_back_covariates.Rd man/adjust_EB.Rd man/adjust_batch.Rd man/aprior.Rd man/back_transform_abd.Rd man/bprior.Rd man/catchToList.Rd man/check_D.Rd man/check_batch.Rd man/check_covariates.Rd man/check_covariates_random.Rd man/check_exposure.Rd man/check_feature_abd.Rd man/check_metadata.Rd man/check_options.Rd man/check_options_continuous.Rd man/check_pseudo_count.Rd man/check_rank.Rd man/check_samples.Rd man/check_samples_D.Rd man/construct_design.Rd man/construct_ind.Rd man/continuous_discover.Rd man/create_table_maaslin.Rd man/diagnostic_adjust_batch.Rd man/diagnostic_continuous_discover.Rd man/diagnostic_discrete_discover.Rd man/discrete_discover.Rd man/fill_dimnames.Rd man/fit_EB.Rd man/fit_shrink.Rd man/fit_stand_feature.Rd man/it_sol.Rd man/lm_meta.Rd man/match_control.Rd man/normalize_features.Rd man/relocate_scale.Rd man/rename_maaslin.Rd man/rma_wrapper.Rd man/set_pseudo.Rd man/shorten_name.Rd man/standardize_feature.Rd man/transform_features.Rd man/tss.Rd man/vaginal_abd.Rd man/vaginal_meta.Rd man/visualize_continuous_discover.Rd tests/testthat.R tests/testthat/test-helpers.R tests/testthat/test-helpers_adjust_batch.R tests/testthat/test-helpers_lm_meta.R vignettes/MMUPHin.Rmd