Files in biodosimetry-uab/biodosetools
An R Shiny Application for Biological Dosimetry
.Rbuildignore
.github/.gitignore
.github/issue_template.md
.github/workflows/R-CMD-check.yaml
.github/workflows/deploy-shiny.yml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
CONTRIBUTORS.md
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/biodosetools-package.R
R/calcs_aberrations.R
R/calcs_characteristic_limits.R
R/calcs_estimation.R
R/calcs_fitting.R
R/calcs_translocations.R
R/data.R
R/golem_utils_ui.R
R/mod_estimation_dicent_ui.R
R/mod_estimation_micro_ui.R
R/mod_estimation_server.R
R/mod_estimation_trans_ui.R
R/mod_fitting_dicent_ui.R
R/mod_fitting_micro_ui.R
R/mod_fitting_server.R
R/mod_fitting_trans_ui.R
R/mod_help_server.R
R/mod_trans_server.R
R/run_app.R
R/utils-md.R
R/utils-pipe.R
R/utils.R
R/utils_estimation.R
R/utils_fitting.R
R/widgets.R
README.Rmd
README.md
biodosetools.Rproj
cran-comments.md
data-raw/dna-content-table-ihgsc-raw.csv
data-raw/dna-content-table-morton-raw.csv
data-raw/dna_content_fractions.R
data/dna_content_fractions_ihgsc.rda
data/dna_content_fractions_morton.rda
dev/01_start.R
dev/02_dev.R
dev/03_deploy.R
dev/04_check.R
dev/characteritic_limits_poisson.R
dev/characteritic_limits_poisson_simplified.R
dev/david-microniclei-data.Rmd
dev/deploy_app_dev.R
dev/deploy_app_redirect.R
dev/run_dev.R
dev/shiny-dev/app.R
dev/shiny-dev/app_file_manifest.txt
dev/shiny-dev/rsconnect/documents/app.R/shinyapps.io/aldomann/biodosetools-dev.dcf
dev/shiny-redirect/app.R
dev/shiny-redirect/app_file_manifest.txt
dev/shiny-redirect/rsconnect/shinyapps.io/aldomann/biodosetools-v3.dcf
dev/shiny-redirect/www/biodosetools_logo.svg
dev/shiny-redirect/www/favicon.png
dev/shiny-redirect/www/style.css
inst/CITATION
inst/app/help/dicent/dose_error_methods.md
inst/app/help/estimation/cases_data_input.md
inst/app/help/estimation/cases_data_load.md
inst/app/help/estimation/dose_assessment.md
inst/app/help/estimation/dose_error.md
inst/app/help/estimation/dose_exposure.md
inst/app/help/estimation/dose_mixed_yields.md
inst/app/help/estimation/fit_data_input.md
inst/app/help/estimation/fit_data_load.md
inst/app/help/estimation/fraction_coeff_select.md
inst/app/help/fitting/count_data_aggregated.md
inst/app/help/fitting/count_data_input.md
inst/app/help/fitting/count_data_load.md
inst/app/help/fitting/fitting_options_formula.md
inst/app/help/fitting/fitting_options_model.md
inst/app/help/micro/dose_error_methods.md
inst/app/help/micro/fitting_options_model.md
inst/app/help/save/estimation_data_save_report.md
inst/app/help/save/fit_data_save.md
inst/app/help/save/fit_data_save_report.md
inst/app/help/trans/cases_data_confounders.md
inst/app/help/trans/cases_data_input.md
inst/app/help/trans/cases_data_load.md
inst/app/help/trans/colors_data_input.md
inst/app/help/trans/colors_data_input_b.md
inst/app/help/trans/dose_error_methods.md
inst/app/help/trans/fit_data_estimation.md
inst/app/reports/estimation-report-docx.Rmd
inst/app/reports/estimation-report-pdf.Rmd
inst/app/reports/fitting-report-docx.Rmd
inst/app/reports/fitting-report-pdf.Rmd
inst/app/reports/logo.pdf
inst/app/www/about_body.md
inst/app/www/biodosetools_style.css
inst/app/www/contributors_app.md
inst/app/www/favicon-highres.png
inst/app/www/favicon.png
inst/app/www/home.svg
inst/app/www/icon_small.svg
inst/app/www/sass/compile_sass.R
inst/app/www/sass/main.scss
inst/app/www/sass/modules/boxes.scss
inst/app/www/sass/modules/buttons.scss
inst/app/www/sass/modules/checkboxes.scss
inst/app/www/sass/modules/config.scss
inst/app/www/sass/modules/custom.scss
inst/app/www/sass/modules/fixes.scss
inst/app/www/sass/modules/fontawesome.scss
inst/app/www/sass/modules/fonts.scss
inst/app/www/sass/modules/misc.scss
inst/app/www/sass/modules/modals.scss
inst/app/www/sass/modules/navbar.scss
inst/app/www/sass/modules/radiobuttons.scss
inst/app/www/sass/modules/sidebar.scss
inst/app/www/sass/modules/switches.scss
inst/extdata/cases-data-hetero.csv
inst/extdata/cases-data-partial.csv
inst/extdata/count-data-barquinero-1995-aggr.csv
inst/extdata/count-data-barquinero-1995.csv
inst/extdata/count-data-rodriguez-2004-aggr.csv
inst/extdata/count-data-rodriguez-2004.csv
inst/extdata/dicentrics-fitting-results.rds
inst/extdata/translocations-fitting-results.rds
inst/golem-config.yml
man/AIC_from_data.Rd
man/R_factor.Rd
man/biodosetools.Rd
man/calculate_aberr.Rd
man/calculate_aberr_table.Rd
man/calculate_characteristic_limits.Rd
man/calculate_genome_factor.Rd
man/calculate_model_stats.Rd
man/calculate_trans_rate_manual.Rd
man/calculate_trans_rate_sigurdson.Rd
man/calculate_yield.Rd
man/calculate_yield_infimum.Rd
man/correct_boundary.Rd
man/correct_conf_int.Rd
man/correct_negative_vals.Rd
man/correct_yield.Rd
man/dna_content_fractions_ihgsc.Rd
man/dna_content_fractions_morton.Rd
man/estimate_hetero_mixed_poisson.Rd
man/estimate_partial_body_dolphin.Rd
man/estimate_whole_body_delta.Rd
man/estimate_whole_body_merkle.Rd
man/figures/logo.png
man/fit.Rd
man/fit_glm_method.Rd
man/fit_maxlik_method.Rd
man/get_deltamethod_std_err.Rd
man/include_help.Rd
man/load_rmd_report.Rd
man/pipe.Rd
man/plot_estimated_dose_curve.Rd
man/plot_fit_dose_curve.Rd
man/prepare_maxlik_count_data.Rd
man/project_yield.Rd
man/protracted_g_function.Rd
man/run_app.Rd
man/yield_error_fun.Rd
man/yield_fun.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-dicentrics.R
tests/testthat/test-golem-recommended.R
tests/testthat/test-golem_utils_ui.R
tests/testthat/test-init-tables.R
tests/testthat/test-mod_estimation_server.R
tests/testthat/test-mod_fitting_server.R
tests/testthat/test-mod_help_server.R
tests/testthat/test-translocations.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/dicent-estimation.Rmd
vignettes/dicent-fitting.Rmd
vignettes/figures/screenshot-dicentrics-estimate-01.png
vignettes/figures/screenshot-dicentrics-estimate-01b.png
vignettes/figures/screenshot-dicentrics-estimate-02.png
vignettes/figures/screenshot-dicentrics-estimate-03.png
vignettes/figures/screenshot-dicentrics-estimate-04.png
vignettes/figures/screenshot-dicentrics-fit-01.png
vignettes/figures/screenshot-dicentrics-fit-02.png
vignettes/figures/screenshot-dicentrics-fit-03.png
vignettes/figures/screenshot-dicentrics-fit-04.png
vignettes/figures/screenshot-translocations-estimate-01.png
vignettes/figures/screenshot-translocations-estimate-01b.png
vignettes/figures/screenshot-translocations-estimate-02.png
vignettes/figures/screenshot-translocations-estimate-03.png
vignettes/figures/screenshot-translocations-estimate-04.png
vignettes/figures/screenshot-translocations-estimate-05.png
vignettes/figures/screenshot-translocations-fit-01.png
vignettes/figures/screenshot-translocations-fit-02.png
vignettes/figures/screenshot-translocations-fit-03.png
vignettes/figures/screenshot-translocations-fit-04.png
vignettes/trans-estimation.Rmd
vignettes/trans-fitting.Rmd
