Files in biomics-pasteur-fr/RNADiff
R Tools for RNA-Seq Projects at Institut Pasteur (Biomics Platform)
DESCRIPTION
NAMESPACE
NEWS
R/BCVPlot.R
R/MAplotDE.R
R/MDSPlot.R
R/NAMESPACE.R
R/PCAPlot.R
R/SARTools-package.r
R/averageMatrix.r
R/barplotNul.R
R/barplotTC.R
R/boxplotCounts.R
R/checkContrasts.r
R/checkInfoGlength.R
R/clusterPlot.R
R/compareLists.R
R/convertUnderscores.r
R/densityPlot.R
R/diagLogFC.r
R/diagLogNormalityDisp.R
R/diagSizeFactors.R
R/down.r
R/exportComplete.DESeq2.R
R/exportComplete.edgeR.R
R/geneLengthEffect.r
R/heatmapDE.r
R/histoRawp.R
R/loadCountData.R
R/loadTargetFile.R
R/majSequences.R
R/nDiffTotal.R
R/nbDiffSeuil.R
R/normCounts.edgeR.R
R/normGeneLength.R
R/pairwiseSERE.R
R/pairwiseScatterPlots.R
R/plotDispEstimates.R
R/plotEvolution.r
R/removeNul.R
R/tabIndepFiltering.R
R/up.r
R/vennDiagramDE.R
R/volcanoPlotDE.R
R/welcome.R
README.md
inst/NGS.bib
inst/logo_seul.jpg
inst/outliers.pdf
inst/report1factor.Rnw
inst/reportGLM.Rnw
inst/slides1factor.Rnw
inst/slidesGLM.Rnw
man/BCVPlot.Rd
man/MAplotDE.Rd
man/MDSPlot.Rd
man/PCAPlot.Rd
man/RNADiffAnalysis-package.Rd
man/averageMatrix.Rd
man/barplotNul.Rd
man/barplotTC.Rd
man/boxplotCounts.Rd
man/checkContrasts.Rd
man/checkInfoGlength.Rd
man/clusterPlot.Rd
man/compareLists.Rd
man/convertUnderscores.Rd
man/densityPlot.Rd
man/diagLogFC.Rd
man/diagLogNormalityDisp.Rd
man/diagSizeFactors.Rd
man/down.Rd
man/exportComplete.DESeq2.Rd
man/exportComplete.edgeR.Rd
man/geneLengthEffect.Rd
man/heatmapDE.Rd
man/histoRawp.Rd
man/loadCountData.Rd
man/loadTargetFile.Rd
man/majSequences.Rd
man/nDiffTotal.Rd
man/nbDiffSeuil.Rd
man/normCounts.edgeR.Rd
man/normGeneLength.Rd
man/pairwiseSERE.Rd
man/pairwiseScatterPlots.Rd
man/plotDispEstimates.Rd
man/plotEvolution.Rd
man/removeNul.Rd
man/tabIndepFiltering.Rd
man/up.Rd
man/vennDiagramDE.Rd
man/volcanoPlotDE.Rd
script_DESeq2_1factor.r
script_DESeq2_GLM.r
script_edgeR_1factor.r
script_edgeR_GLM.r
singularity/Singularity.R
singularity/Singularity.sartools
test/Myoluc.gene_lengths
test/Myoluc.gff.tsv
test/README
test/featureCounts/I37_28_feature.out
test/featureCounts/I37_4_feature.out
test/featureCounts/I37_G_feature.out
test/featureCounts/I5_26_feature.out
test/featureCounts/I5_2_feature.out
test/featureCounts/I5_J_feature.out
test/featureCounts/NI37_32_feature.out
test/featureCounts/NI37_8_feature.out
test/featureCounts/NI37_A_feature.out
test/featureCounts/NI5_31_feature.out
test/featureCounts/NI5_6_feature.out
test/featureCounts/NI5_D_feature.out
test/script_DESeq2_GLM.r
test/target2.txt
vignettes/.Rhistory
vignettes/modeDemploiAnaDiff.Rmd
vignettes/schema_dossiers.png
