R/NAMESPACE.R

In biomics-pasteur-fr/RNADiff: R Tools for RNA-Seq Projects at Institut Pasteur (Biomics Platform)

#' @exportPattern ^[a-zA-Z]
#' @import DESeq2
#' @import edgeR
#' @import ggplot2
#' @importFrom futile.logger flog.threshold
#' @importFrom GGally ggpairs ggally_points wrap
#' @importFrom ggdendro ggdendrogram
#' @importFrom ggrepel geom_text_repel
#' @importFrom graphics abline axis barplot boxplot curve hist image layout legend lines mtext pairs par plot plot.new points polygon rect segments strheight strwidth text title
#' @importFrom grid grid.draw textGrob gpar
#' @importFrom gridExtra grid.arrange
#' @importFrom grDevices colorRampPalette dev.off pdf
#' @importFrom limma plotMDS
#' @importFrom pheatmap pheatmap
#' @importFrom RColorBrewer brewer.pal
#' @importFrom rlang .data
#' @importFrom VennDiagram venn.diagram
#' @importFrom S4Vectors mcols metadata
#' @importFrom scales trans_breaks log10_trans trans_new trans_format log_breaks math_format
#' @importFrom SummarizedExperiment assay
#' @importFrom stats coefficients aggregate as.dendrogram as.dist cor density dist dnorm hclust lm median order.dendrogram prcomp qf quantile relevel reorder sd var
#' @importFrom utils head packageVersion read.table tail write.table stack
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