JASPAR2018_CORE_DBSCORES: JASPAR2018 CORE database scores

In bjmt/universalmotif: Import, Modify, and Export Motifs with R

JASPAR2018 CORE database scores

Description

For use with compare_motifs(). The precomputed scores allow for fast P-value estimation. These scores were generated using make_DBscores() with the JASPAR2018 CORE motif set. The scores are organized in a DataFrame. In this DataFrame is the location and scale of scores resulting from a statistical distribution using the the comparisons of JASPAR2018 CORE motifs with randomized motifs of the specified subject and target motif length. Created using make_DBscores() from universalmotif v1.4.0. The parameters used can be seen via S4Vectors::metadata(JASPAR2018_CORE_DBSCORES).

Usage

JASPAR2018_CORE_DBSCORES

Format

DataFrame with function args in the metadata slot.

bjmt/universalmotif documentation built on March 18, 2024, 8:32 a.m.