read_uniprobe: Import UNIPROBE motifs.

In bjmt/universalmotif: Import, Modify, and Export Motifs with R

Import UNIPROBE motifs.

Description

Import UNIPROBE formatted motifs. Assumed DNA.

Usage

read_uniprobe(file, skip = 0)

Arguments

file	character(1) File name.
skip	numeric(1) If not zero, will skip however many desired lines in the file before starting to read.

Value

list universalmotif objects.

Author(s)

Benjamin Jean-Marie Tremblay, [e-mail]

References

Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML (2015). “UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.” Nucleic Acids Research, 43, D117-D122.

See Also

Other read_motifs: read_cisbp(), read_homer(), read_jaspar(), read_matrix(), read_meme(), read_motifs(), read_transfac()

Examples

uniprobe.minimal <- read_uniprobe(system.file("extdata", "uniprobe_minimal.txt",
                                              package = "universalmotif"))
uniprobe.full <- read_uniprobe(system.file("extdata", "uniprobe_full.txt",
                                           package = "universalmotif"))

bjmt/universalmotif documentation built on Nov. 16, 2024, 7:38 a.m.