motif_rc: Get the reverse complement of a DNA or RNA motif.

View source: R/motif_rc.R

motif_rcR Documentation

Get the reverse complement of a DNA or RNA motif.

Description

For any motif, change the motif slot to it's reverse complement. If the multifreq slot is filled, then it is also applied. No other slots are affected.

Usage

motif_rc(motifs, ignore.alphabet = FALSE)

Arguments

motifs

See convert_motifs() for acceptable formats

ignore.alphabet

logical(1) If TRUE, then motif_rc() throws an error when it detects a non-DNA/RNA motif. If FALSE, it will proceed regardless.

Value

See convert_motifs() for available output formats.

Author(s)

Benjamin Jean-Marie Tremblay, benjamin.tremblay@uwaterloo.ca

Examples

jaspar <- read_jaspar(system.file("extdata", "jaspar.txt",
                                  package = "universalmotif"))
jaspar.rc <- motif_rc(jaspar)


bjmt/universalmotif documentation built on Nov. 13, 2022, 3:09 p.m.