motif_rc: Get the reverse complement of a DNA or RNA motif.
In bjmt/universalmotif: Import, Modify, and Export Motifs with R

motif_rc

R Documentation

Get the reverse complement of a DNA or RNA motif.

Description

For any motif, change the motif slot to it's reverse complement. If the multifreq slot is filled, then it is also applied. No other slots are affected.

Usage

motif_rc(motifs, ignore.alphabet = FALSE)

Arguments

`motifs`	See `convert_motifs()` for acceptable formats
`ignore.alphabet`	`logical(1)` If `TRUE`, then `motif_rc()` throws an error when it detects a non-DNA/RNA motif. If `FALSE`, it will proceed regardless.

Value

See convert_motifs() for available output formats.

Author(s)

Benjamin Jean-Marie Tremblay, benjamin.tremblay@uwaterloo.ca

Examples

jaspar <- read_jaspar(system.file("extdata", "jaspar.txt",
                                  package = "universalmotif"))
jaspar.rc <- motif_rc(jaspar)

bjmt/universalmotif documentation built on March 18, 2024, 8:32 a.m.