read_motifs: Import universalmotif formatted motifs.

In bjmt/universalmotif: Import, Modify, and Export Motifs with R

Import universalmotif formatted motifs.

Description

Import motifs created from write_motifs(). For optimal storage of universalmotif class motifs, consider using saveRDS() and readRDS(). Currently the universalmotif format is YAML-based, but this is subject to change.

Usage

read_motifs(file, skip = 0, progress = FALSE, BP = FALSE)

Arguments

file	character(1) File name.
skip	numeric(1) If not zero, will skip however many desired lines in the file before starting to read.
progress	logical(1) Show progress.
BP	logical(1) Allows for the use of BiocParallel within read_motifs(). See BiocParallel::register() to change the default backend.

Value

list universalmotif objects.

Author(s)

Benjamin Jean-Marie Tremblay, [e-mail]

See Also

Other read_motifs: read_cisbp(), read_homer(), read_jaspar(), read_matrix(), read_meme(), read_transfac(), read_uniprobe()

bjmt/universalmotif documentation built on Nov. 16, 2024, 7:38 a.m.