sample_sites: Generate binding sites from a motif.

In bjmt/universalmotif: Import, Modify, and Export Motifs with R

Generate binding sites from a motif.

Description

Given probabilities for a sequence as represented by a motif, generate random sequences with the same length as the motif.

Usage

sample_sites(motif, n = 100, use.freq = 1)

Arguments

motif	See convert_motifs() for acceptable formats.
n	numeric(1) Number of sites to generate.
use.freq	numeric(1) If one, use regular motif matrix. Otherwise, use respective multifreq matrix.

Value

XStringSet object.

Author(s)

Benjamin Jean-Marie Tremblay, [e-mail]

See Also

create_sequences(), create_motif(), add_multifreq()

Examples

motif <- create_motif()
sites <- sample_sites(motif)

bjmt/universalmotif documentation built on March 18, 2024, 8:32 a.m.