sample_sites: Generate binding sites from a motif.
In bjmt/universalmotif: Import, Modify, and Export Motifs with R
sample_sites R Documentation
Generate binding sites from a motif.
Description
Given probabilities for a sequence as represented by a motif, generate
random sequences with the same length as the motif.
Usage
sample_sites(motif, n = 100, use.freq = 1)
Arguments
motif
See convert_motifs() for acceptable formats.
n
numeric(1) Number of sites to generate.
use.freq
numeric(1) If one, use regular motif matrix. Otherwise,
use respective multifreq matrix.
Value
XStringSet object.
Author(s)
Benjamin Jean-Marie Tremblay, benjamin.tremblay@uwaterloo.ca
See Also
create_sequences(), create_motif(), add_multifreq()
Examples
motif <- create_motif()
sites <- sample_sites(motif)
bjmt/universalmotif documentation built on Nov. 16, 2024, 7:38 a.m.
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| sample_sites | R Documentation |
Generate binding sites from a motif.
Description
Given probabilities for a sequence as represented by a motif, generate random sequences with the same length as the motif.
Usage
sample_sites(motif, n = 100, use.freq = 1)
Arguments
motif |
See |
n |
|
use.freq |
|
Value
XStringSet object.
Author(s)
Benjamin Jean-Marie Tremblay, benjamin.tremblay@uwaterloo.ca
See Also
create_sequences(), create_motif(), add_multifreq()
Examples
motif <- create_motif()
sites <- sample_sites(motif)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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