write_jaspar: Export motifs in JASPAR format.

In bjmt/universalmotif: Import, Modify, and Export Motifs with R

Export motifs in JASPAR format.

Description

Convert motifs to JASPAR format and write to file. See http://jaspar.genereg.net/.

Usage

write_jaspar(motifs, file, overwrite = FALSE, append = FALSE)

Arguments

motifs	See convert_motifs() for acceptable formats.
file	character(1) File name.
overwrite	logical(1) Overwrite existing file.
append	logical(1) Add to an existing file.

Value

NULL, invisibly.

Author(s)

Benjamin Jean-Marie Tremblay, [e-mail]

References

Khan A, Fornes O, Stigliani A, Gheorghe M, Castro-Mondragon JA, van der Lee R, Bessy A, Cheneby J, Kulkarni SR, Tan G, Baranasic D, Arenillas DJ, Sandelin A, Vandepoele K, Lenhard B, Ballester B, Wasserman WW, Parcy F, Mathelier A (2018). “JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.” Nucleic Acids Research, 46, D260-D266.

See Also

read_jaspar()

Other write_motifs: write_homer(), write_matrix(), write_meme(), write_motifs(), write_transfac()

Examples

transfac <- read_transfac(system.file("extdata", "transfac.txt",
                                    package = "universalmotif"))
write_jaspar(transfac, tempfile())

bjmt/universalmotif documentation built on Nov. 16, 2024, 7:38 a.m.