API for blue-moon22/resistomeAnalysis
Resistome Analysis
| Global functions | |
|---|---|
| bootstrap_CI | Man page Source code |
| bootstrap_percentage | Man page Source code |
| combineBedtools | Man page Source code |
| combineCARDBlast | Man page Source code |
| combineMetaphlanSamples | Man page Source code |
| combineMetaphlanandARG | Man page Source code |
| combinePATRICBlast | Man page Source code |
| combineSubsampled | Man page Source code |
| createCircularGraph | Man page Source code |
| createPairedData | Man page Source code |
| createRPKMHeatmap | Man page Source code |
| createUSDendrogram | Man page Source code |
| drawCoreARGs | Man page Source code |
| drawCorrelationHeatmap | Man page Source code |
| filterBlastOutput | Man page Source code |
| g_legend | Man page Source code |
| getBestBlastHit | Man page Source code |
| getProportion | Man page Source code |
| getRelativeAbundance | Man page Source code |
| getRelativeAbundanceIndividuals | Man page Source code |
| getSpearmanCorrelation | Man page Source code |
| joinProportionAndBootstrap | Man page Source code |
| mergeData | Man page Source code |
| plotARGClassAbundance | Man page Source code |
| plotGraph | Man page Source code |
| plotIndividualAbundance | Man page Source code |
| plotMultipleARGRichnessGraphs | Man page Source code |
| plotMultipleRPKM | Man page Source code |
| plotPercentages | Man page Source code |
| plotRPKM | Man page Source code |
| plotResistotypes | Man page Source code |
| plotScatter | Man page Source code |
| plotVolcano | Man page Source code |
| readMappingData | Man page Source code |
| readResistanceMapUseData | Man page Source code |
| runDESeq2 | Man page Source code |
| runPrincipleCoordinateAnalysis | Man page Source code |
| runTtest | Man page Source code |
