filterBlastOutput: Filters blast output file

In blue-moon22/resistomeAnalysis: Resistome Analysis

Description

Filters blast output file

Usage

filterBlastOutput(
  filename,
  column_names,
  e_value_filter = NA,
  identity_filter = NA,
  min_length_filter = NA
)

Arguments

filename	A string of the file name
column_names	A character vector of the headers of the blast file
e_value_filter	A numeric e-value cut-off
identity_filter	A numeric identity_filter cut-off
min_length_filter	A numeric minimum contig length cut-off

blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.