plotScatter: Plots a scatter plots of the porportions of samples that...

In blue-moon22/resistomeAnalysis: Resistome Analysis

Description

Plots a scatter plots of the porportions of samples that contain a property for each Location for subsampled and non-subsampled samples

Usage

plotScatter(df_map_pb_comb)

Arguments

df_map_pb_comb

A dataframe with proportions and confidence intervals from non-subsampled and equivalent subsampled samples

Value

None

Examples

df_map <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = TRUE)
df_map_sub_saliva <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/subsampled_saliva_merged.csv", without_US_duplicates = TRUE)
df_map_pb_comb <- combineSubsampled(df_map, df_map_sub_saliva, "Drug.Class", "saliva")

plotScatter(df_map_pb_comb)

blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.