readMappingData: Read a csv file of combined mapping data and metadata

In blue-moon22/resistomeAnalysis: Resistome Analysis

Description

Read a csv file of combined mapping data and metadata

Usage

readMappingData(filename, without_US_duplicates = TRUE)

Arguments

filename	A character vector of the csv
without_US_duplicates	Logical: If TRUE, includes the US longitudinal data

Value

A dataframe of processed, combined mapping data and metadata

Examples

df_map <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = TRUE)
df_map_dup <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = FALSE)

blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.