combineSubsampled: Combines proportions and confidence intervals from...

In blue-moon22/resistomeAnalysis: Resistome Analysis

Description

Combines proportions and confidence intervals from non-subsampled and equivalent subsampled samples

Usage

combineSubsampled(df_map, df_map_sub, level)

Arguments

df_map	A dataframe of combined non-subsampled mapping data and metadata
df_map_sub	A dataframe of combined subsampled mapping data and metadata
level	A string of a column name e.g. "Drug.Class"

Value

A dataframe with proportions and confidence intervals from non-subsampled and equivalent subsampled samples

Examples

df_map <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = TRUE)
df_map_sub_saliva <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/subsampled_saliva_merged.csv", without_US_duplicates = TRUE)

df_map_pb_comb <- combineSubsampled(df_map, df_map_sub_saliva, "Drug.Class", "saliva")

blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.