combineBedtools: Combines mapping data with metadata and CARD data

In blue-moon22/resistomeAnalysis: Resistome Analysis

Description

Combines mapping data with metadata and CARD data

Usage

combineBedtools(
  filenames,
  output_file,
  metadata_file,
  card_dir,
  subsampled = FALSE
)

Arguments

filenames	A character vector of filenames
output_file	A string of the location of combined file
metadata_file	A string of the location of the metadata file
card_dir	A string of the CARD metadata directory that includes aro_index and aro_categories_index
subsampled	A boolean stating whether reads were subsampled or not before mapping to CARD

blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.