createUSDendrogram: Draws a dendrogram of hierachical clustering of ARG rpkm for...
In blue-moon22/resistomeAnalysis: Resistome Analysis
Description
Usage
Arguments
Value
Examples
Description
Draws a dendrogram of hierachical clustering of ARG rpkm for longitudinal US samples
Usage
1
createUSDendrogram(df_map_long, coloured_labels)
Arguments
coloured_labels
A list of colours named by sample type
df_map_dup
A dataframe of combined non-subsampled or subsampled mapping data and metadata, including longitudinal samples
Value
None
Examples
1
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5
library(RColorBrewer)
df_map_dup <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = FALSE)
top_col <- rev(brewer.pal(8, "Spectral"))
coloured_labels <- c("stool" = top_col[1], "dorsum of tongue" = top_col[2], "buccal mucosa" = top_col[3], "dental" = top_col[4])
createUSDendrogram(df_map_dup, coloured_labels)
blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.
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Description Usage Arguments Value Examples
Description
Draws a dendrogram of hierachical clustering of ARG rpkm for longitudinal US samples
Usage
1 | createUSDendrogram(df_map_long, coloured_labels)
|
Arguments
coloured_labels |
A list of colours named by sample type |
df_map_dup |
A dataframe of combined non-subsampled or subsampled mapping data and metadata, including longitudinal samples |
Value
None
Examples
1 2 3 4 5 | library(RColorBrewer)
df_map_dup <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = FALSE)
top_col <- rev(brewer.pal(8, "Spectral"))
coloured_labels <- c("stool" = top_col[1], "dorsum of tongue" = top_col[2], "buccal mucosa" = top_col[3], "dental" = top_col[4])
createUSDendrogram(df_map_dup, coloured_labels)
|
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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