mergeData: Merge dataframes proportion and confidence intervals of...

In blue-moon22/resistomeAnalysis: Resistome Analysis

Description

Merge dataframes proportion and confidence intervals of samples containing ARG class and resistanceMap use data

Usage

mergeData(percentages_data_list, resistance_map_data)

Arguments

percentages_data_list	A list of dataframes of proportions containing ARG classes and confidence intervals for each sample type
resistance_map_data	A dataframe containing resistanceMap use data

Value

A dataframe of proportions containing ARG classes and confidence intervals, and resistanceMap DDD per 1000

Examples

df_map <- readMappingData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/MAPPING_DATA/nonsubsampled_merged.csv", without_US_duplicates = TRUE)
df_map_pb_saliva_class <- joinProportionAndBootstrap(df_map, "Drug.Class", "saliva")
df_map_pb_dental_class <- joinProportionAndBootstrap(df_map, "Drug.Class", "dental")
rm_use_card <- readResistanceMapUseData("/home/vicky/Documents/CHMI/Resistome-paper/resistomeAnalysis/db/ResistanceMap/resistanceMap_use.csv")

data_merge <- mergeData(list(saliva = df_map_pb_saliva_class, dental = df_map_pb_dental_class), rm_use_card)

blue-moon22/resistomeAnalysis documentation built on Jan. 17, 2020, 4:15 a.m.