Files in blue-moon22/resistomeAnalysis

Resistome Analysis

R/boxplotsARGRichness.R R/boxplotsRPKM.R R/combineMetaphlanAndARGs.R R/core_resistome.R R/correlationAnalysis.R R/dendrogram.R R/differentialAnalysis.R R/getProportion.R R/heatmaps.R R/processFiles.R R/readMappingData.R R/resistanceMapUse.R R/resistotypes.R R/stackedBarChartsRPKM.R README.md man/bootstrap_CI.Rd man/bootstrap_percentage.Rd man/combineBedtools.Rd man/combineCARDBlast.Rd man/combineMetaphlanSamples.Rd man/combineMetaphlanandARG.Rd man/combinePATRICBlast.Rd man/combineSubsampled.Rd man/createCircularGraph.Rd man/createPairedData.Rd man/createRPKMHeatmap.Rd man/createUSDendrogram.Rd man/drawCoreARGs.Rd man/drawCorrelationHeatmap.Rd man/filterBlastOutput.Rd man/g_legend.Rd man/getBestBlastHit.Rd man/getProportion.Rd man/getRelativeAbundance.Rd man/getRelativeAbundanceIndividuals.Rd man/getSpearmanCorrelation.Rd man/joinProportionAndBootstrap.Rd man/mergeData.Rd man/plotARGClassAbundance.Rd man/plotGraph.Rd man/plotIndividualAbundance.Rd man/plotMultipleARGRichnessGraphs.Rd man/plotMultipleRPKM.Rd man/plotPercentages.Rd man/plotRPKM.Rd man/plotResistotypes.Rd man/plotScatter.Rd man/plotVolcano.Rd man/readMappingData.Rd man/readResistanceMapUseData.Rd man/runDESeq2.Rd man/runPrincipleCoordinateAnalysis.Rd man/runTtest.Rd