plot_hisat2_stats: Plot HISAT2 mapping statistics as a scatterplot

In bryancquach/omixjutsu: Utilities for omics analysis tasks

Plot HISAT2 mapping statistics as a scatterplot

Description

Create a concordant alignment vs. overall alignment rate scatterplot. Only applicable for paired-end sequencing data.

Usage

plot_hisat2_stats(
  data,
  point_size = 4,
  fill = "red4",
  alpha = 0.75,
  ids = NULL,
  invert = F
)

Arguments

data	A data frame HISAT2 mapping data in the same format as hisat2 returned by load_paired_end_qc_data.
point_size	A numeric. The size for data points.
fill	A string. The fill color for data points.
alpha	A numeric. The alpha level for data points.
ids	A vector of rownames for subsetting data for plotting.
invert	A logical. Should ids be used for excluding rows from plotting instead?

Value

A ggplot object.

See Also

load_paired_end_qc_data

bryancquach/omixjutsu documentation built on Jan. 29, 2023, 3:47 p.m.