plot_seq_depth_vs_lib_complexity: Sequencing depth vs. library complexity scatterplot
In bryancquach/omixjutsu: Utilities for omics analysis tasks

plot_seq_depth_vs_lib_complexity

R Documentation

Sequencing depth vs. library complexity scatterplot

Create a sequencing depth vs. unique read percentage scatterplot.

plot_seq_depth_vs_lib_complexity(
  data,
  point_size = 4,
  fill = "red4",
  alpha = 0.75,
  ids = NULL,
  invert = F
)

`data`	A data frame with sequencing depth and unique read percentage data in the same format as `fastqc` returned by `load_paired_end_qc_data`.
`point_size`	A numeric. The size for data points.
`fill`	A string. The fill color for data points.
`alpha`	A numeric. The alpha level for data points.
`ids`	A vector of rownames for subsetting `data` for plotting.
`invert`	A logical. Should `ids` be used for excluding rows from plotting instead?

A ggplot object.