Result-class: Object containing deconvolved/predicted signatures, sample...
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Object containing deconvolved/predicted signatures, sample weights, and
the bagel object the result was generated from
Slots
signaturesA matrix of signatures by mutational motifs
exposuresA matrix of samples by signature weights
tablesA character vector of table names used to make the result
typeDescribes how the signatures/weights were generated
bagelThe bagel object the results were generated from
log_likPosterior likelihood of the result (LDA only)
perplexityMetric of goodness of model fit
umapList of umap data.frames for plotting and analysis
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description
Object containing deconvolved/predicted signatures, sample weights, and the bagel object the result was generated from
Slots
signaturesA matrix of signatures by mutational motifs
exposuresA matrix of samples by signature weights
tablesA character vector of table names used to make the result
typeDescribes how the signatures/weights were generated
bagelThe bagel object the results were generated from
log_likPosterior likelihood of the result (LDA only)
perplexityMetric of goodness of model fit
umapList of umap data.frames for plotting and analysis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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