plot_signatures: Plotting Signature Motif counts/spectra

In campbio/BAGEL: Novel Mutational Signature Analysis

Description

Plotting Signature Motif counts/spectra

Usage

plot_signatures(
  result,
  no_legend = FALSE,
  plotly = FALSE,
  color_variable = NULL,
  color_mapping = NULL,
  text_size = 10,
  facet_size = 10,
  show_x_labels = TRUE
)

Arguments

result	S4 Result Object
no_legend	Remove legend from plot
plotly	add plotly layer for plot interaction
color_variable	Annotation column to use for coloring plotted motifs, provided by counts table from input result's bagel object
color_mapping	Mapping from color_variable to color names, provided by counts table from input result's bagel object
text_size	Size of axis text
facet_size	Size of facet text
show_x_labels	Toggle plotting of x-axis labels

Value

Generates plot no return

Examples

result <- readRDS(system.file("testdata", "res.rds", package = "BAGEL"))
plot_signatures(result)

campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.