set_sample_annotations: Set sample level annotations for bagel object
In campbio/BAGEL: Novel Mutational Signature Analysis
Description
Usage
Arguments
Value
Examples
Description
Set sample level annotations for bagel object
Usage
1
set_sample_annotations(bay, annotations)
Arguments
bay
Bagel object we input sample into
annotations
Sample DataFrame
Value
Sets sample_annotations slot no return
Examples
1
2
3
4
bay <- readRDS(system.file("testdata", "bagel_sbs96.rds", package = "BAGEL"))
sample_annotations <- read.table(system.file("testdata",
"sample_annotations.txt", package = "BAGEL"), sep = "\t", header=TRUE)
set_sample_annotations(bay, data.table::as.data.table(sample_annotations))
campbio/BAGEL documentation built on Oct. 6, 2020, 3:59 a.m.
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Description Usage Arguments Value Examples
Description
Set sample level annotations for bagel object
Usage
1 | set_sample_annotations(bay, annotations)
|
Arguments
bay |
Bagel object we input sample into |
annotations |
Sample DataFrame |
Value
Sets sample_annotations slot no return
Examples
1 2 3 4 | bay <- readRDS(system.file("testdata", "bagel_sbs96.rds", package = "BAGEL"))
sample_annotations <- read.table(system.file("testdata",
"sample_annotations.txt", package = "BAGEL"), sep = "\t", header=TRUE)
set_sample_annotations(bay, data.table::as.data.table(sample_annotations))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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